Function reference
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bdiagNA() - Create a Block Diagonal Matrix with NA outside the diagonal
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bonferroni.test() - Weighted Bonferroni-test
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bonferroni.trimmed.simes.test() - Trimmed Simes test for intersections of two hypotheses and otherwise weighted Bonferroni-test
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checkCorrelation() - Check correlation matrix
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entangledMCP-class - Class entangledMCP
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BonferroniHolm()BretzEtAl2011()BauerEtAl2001()BretzEtAl2009a()BretzEtAl2009b()BretzEtAl2009c()HommelEtAl2007()HommelEtAl2007Simple()parallelGatekeeping()improvedParallelGatekeeping()fallback()fixedSequence()simpleSuccessiveI()simpleSuccessiveII()truncatedHolm()generalSuccessive()HuqueAloshEtBhore2011()HungEtWang2010()MaurerEtAl1995()cycleGraph()improvedFallbackI()improvedFallbackII()FerberTimeDose2011()Ferber2011()Entangled1Maurer2012()Entangled2Maurer2012()WangTing2014() - Functions that create different example graphs
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gMCP() - Graph based Multiple Comparison Procedures
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gMCP.extended() - Graph based Multiple Comparison Procedures
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gMCPResult-class - Class gMCPResult
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gPADInterim-class - Class gPADInterim
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generatePvals() - generatePvals
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generateWeights() - generateWeights
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graphMCP-class - Class graphMCP
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graphTest() - Multiple testing using graphs
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hGraph() - Create multiplicity graphs using ggplot2
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joinGraphs() - Joins two graphMCP objects
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matrix2graph()graph2matrix() - Matrix2Graph and Graph2Matrix
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parametric.test() - Weighted parametric test
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permutations() - Title Placeholder
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placeNodes() - Placement of graph nodes
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rejectNode() - Rejects a node/hypothesis and updates the graph accordingly.
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replaceVariables() - Replaces variables in a general graph with specified numeric values
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simConfint() - Simultaneous confidence intervals for sequentially rejective multiple test procedures
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simes.on.subsets.test() - Simes on subsets, otherwise Bonferroni
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simes.test() - Weighted Simes test
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subgraph() - Get a subgraph
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substituteEps() - Substitute Epsilon
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weighted.test.functions - Weighted Test Functions for use with gMCP